# This code is a part of X-ray: Generate and Analyse (XGA), a module designed for the XMM Cluster Survey (XCS).
# Last modified by David J Turner (turne540@msu.edu) 20/02/2023, 14:04. Copyright (c) The Contributors
import inspect
from types import FunctionType
# Doing star imports just because its more convenient, and there won't ever be enough code in these that
# it becomes a big inefficiency
from .density import *
from .misc import *
from .sb import *
from .temperature import *
# This dictionary is meant to provide pretty versions of model/function names to go in plots
# This method of merging dictionaries only works in Python 3.5+, but that should be fine
MODEL_PUBLICATION_NAMES = {**DENS_MODELS_PUB_NAMES, **MISC_MODELS_PUB_NAMES, **SB_MODELS_PUB_NAMES,
**TEMP_MODELS_PUB_NAMES}
MODEL_PUBLICATION_PAR_NAMES = {**DENS_MODELS_PAR_NAMES, **MISC_MODELS_PAR_NAMES, **SB_MODELS_PAR_NAMES,
**TEMP_MODELS_PAR_NAMES}
# These dictionaries tell the profile fitting function what models, start pars, and priors are allowed
PROF_TYPE_MODELS = {"brightness": SB_MODELS, "gas_density": DENS_MODELS, "gas_temperature": TEMP_MODELS}
[docs]def convert_to_odr_compatible(model_func: FunctionType, new_par_name: str = 'β', new_data_name: str = 'x_values') \
-> FunctionType:
"""
This is a bit of a weird one; its meant to convert model functions from the standard XGA setup
(i.e. pass x values, then parameters as individual variables), into the form expected by Scipy's ODR.
I'd recommend running a check to compare results from the original and converted functions where-ever
this function is called - I don't completely trust it.
:param FunctionType model_func: The original model function to be converted.
:param str new_par_name: The name we want to use for the new list/array of fit parameters.
:param str new_data_name: The new name we want to use for the x_data.
:return: A successfully converted model function (hopefully) which can be used with ODR.
:rtype: FunctionType
"""
# This is not at all perfect, but its a bodge that will do for now. If type hints are included in
# the signature (as they should be in all XGA models), then np.ndarray will be numpy.ndarray in the
# signature I extract. This dictionary will be used to swap that out, along with any similar problems I encounter
common_conversions = {'numpy': 'np'}
# This reads out the function signature - which should be structured as x_values, par1, par2, par3 etc.
mod_sig = inspect.signature(model_func)
# Convert that signature into a string
str_mod_sig = str(mod_sig)
# Go through the conversion dictionary and 'correct' the signature
for conv in common_conversions:
str_mod_sig = str_mod_sig.replace(conv, common_conversions[conv])
# For ODR I've decided that β is the name of the new fit parameter array, and x_values the name of the
# x data. This will replace the current signature of the function.
new_mod_sig = '({np}, {nd})'.format(np=new_par_name, nd=new_data_name)
# I find the current names of the parameters in the signature, excluding the x value name in the original function
# and reading that into a separate variable
mod_sig_pars = list(mod_sig.parameters.keys())
par_names = mod_sig_pars[1:]
# Store the name of the x data here
data_name = mod_sig_pars[0]
# This gets the source code of the function as a string
mod_code = inspect.getsource(model_func)
# I swap in the new signature
new_mod_code = mod_code.replace(str_mod_sig, new_mod_sig)
# And now I know the exact form of the whole def line I can define that as a variable and then temporarily
# remove it from the source code
known_def = 'def {mn}'.format(mn=model_func.__name__) + new_mod_sig + ':'
new_mod_code = new_mod_code.replace(known_def, '')
# Then I swing through all the original parameter names and replace them with accessing elements of our
# new beta parameter list/array.
for par_ind, par_name in enumerate(par_names):
new_mod_code = new_mod_code.replace(par_name, '{np}[{i}]'.format(np=new_par_name, i=par_ind))
# Then I do the same thing for the new x data variable name
new_mod_code = new_mod_code.replace(data_name, new_data_name)
# Adds the def SIGNATURE line back in
new_mod_code = known_def + new_mod_code
# This compiles the code and creates a new function
new_model_func_code = compile(new_mod_code, '<string>', 'exec')
new_model_func = FunctionType(new_model_func_code.co_consts[0], globals(), model_func.__name__)
return new_model_func